The biggest desktop UX pass since launch — the file tree became a file manager, the genome became a browsable interface, the titlebar got out of its own way, and transparency stopped turning menus into ghosts. Plus two real intelligence bugs fixed under the hood.

• File manager in the tree. Right-click (or keyboard) to create, rename, duplicate, copy/cut/paste, and delete files and folders — with drag-and-drop moves, inline rename, and a confirm dialog for deletes. The tree also stopped hiding things: dotfiles (.github, .env…) show, and deep folders load on expand instead of being silently truncated.
• Draggable panels. The sidebar, context pane, and inspector all resize by dragging, with sane min/max widths, double-click to reset, and the layout persists across restarts. Both side panels collapse and reopen from the titlebar.
• A genome you can actually read. The genome view now parses our own structure into a real interface — a stats bar, dependency pills, and a searchable grid of file cards showing blast-radius, exported signatures, and clickable :line links — with Structured / Markdown / Raw modes. Open it full-screen from the context pane.
• Sessions, reorganized. The sessions menu leads with search (focused on open) and a New-session button that names and starts a fresh conversation; saving is a secondary action.
• A calmer titlebar. Twelve occasional tools fold into one More tools menu, narrow windows collapse the rest into it, provider rows show live readiness dots with a Refresh button, and Zen mode has a one-click toggle.

• Transparency behaves on every theme. With transparency on, menus, pills, tabs, dialogs, and toasts now use a fixed-opacity frosted glass (blurred, but readable) instead of going see-through at low window opacity — and light themes no longer turn murky. Opaque mode is unchanged.
• Language servers stop dying. A second Empryo process (a TUI beside the desktop, a relaunch) was killing the first instance's language servers, which then showed as stuck "starting…" forever. The reaper now only touches genuinely orphaned servers, and dead servers are reported honestly.
• The genome stopped lying about itself. A fully enriched genome could display "semantic: off" if a background task hiccuped — the status now comes from the database, and the mislabeled lsp: line (actually symbol enrichment) reads enriched:.
• Creating a new file in a workspace behind a symlink (macOS /tmp, /var) no longer fails with "path escapes workspace".
• Scrollbar no longer overlaps toggles in drawer lists; the model picker's right-side reopen button no longer hugs the window edge.